random Boolean networks

From: Andrew Wuensche (100020.2727@CompuServe.COM)
Date: Fri Jun 11 1993 - 16:06:03 UTC


The Ghost in the Machine
========================
Cognitive Science Research Paper 281, University of Sussex, 1993 (to be
published in the proceedings of Artificial Life III, Santa Fe Institute
Studies in the Sciences of Complexity).

The following paper describes recent work on the basins of attraction of
random Boolean networks, and implications on memory and learning.  
Currently only hard-copies are available. To request copies, send
email to:

andywu@cogs.susx.ac.uk, or write to

Andy Wuensche, 48 Esmond Road, London W4 1JQ, UK

dont forget to give a surface mail address.


A B S T R A C T
---------------
The Ghost in the Machine
Basins of Attraction of Random Boolean Networks

This paper examines the basins of attraction of random Boolean networks,
a very general class of discrete dynamical systems, in which cellular
automata (CA) form a special sub-class. A reverse algorithm is presented
which directly computes the set of pre-images (if any) of a network's
state. Computation is many orders of magnitude faster than exhaustive
testing, making the detailed structure of random network basins of
attraction readily accessible for the first time. They are portrayed as
diagrams that connect up the network's global states according to their
transitions. Typically, the topology is branching trees rooted on
attractor cycles. 

   The homogeneous connectivity and rules of CA are necessary for the
emergence of coherent space-time structures such as gliders, the basis of
CA models of artificial life. On the other hand random Boolean networks
have a vastly greater parameter/basin field configuration space capable
of emergent categorisation.

   I argue that the basin of attraction field constitutes the network's
memory; but not simply because separate attractors categorise state space
- in addition, within each basin, sub-categories of state space are
categorised along transient trees far from equilibrium, creating a
complex hierarchy of content addressable memory. This may answer a basic
difficulty in explaining memory by attractors in biological networks
where transient lengths are probably astronomical.

   I describe a single step learning algorithm for re-assigning
pre-images in random Boolean networks. This allows the sculpting of their
basin of attraction fields to approach any desired configuration. The
process of learning and its side effects are made visible. In the context
of many semi-autonomous weakly coupled networks, the basin field/network
relationship may provide a fruitful metaphor for the mind/brain.


REFERENCE
---------
Wuensche,A., and M.J.Lesser. The Global Dynamics of Cellular Automata; An
Atlas of Basin of Attraction Fields of One-Dimensional Cellular Automata,
(diskette included), Santa Fe Institute Studies in the Sciences of
Complexity, Reference Vol.I, Addison-Wesley, 1992.


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